wikipathways-collection

WikiPathways WP1376

• WikiPathways: WP1376 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 15
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 15

• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/bac (CXCR4)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/a95 (DOK2)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/f36 (FES)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/b77 (Gene Symbol)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/d3a (HIST2H3C)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/cff (HMGA1)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/f1e (IL2RG)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/d16 (IL4)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/ec4 (IL4)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/a28 (IRS2)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/ac2 (SOCS3)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/ebe (SOCS5)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/e59 (SOS1)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/ac9 (STAT5A)
• http://classic.wikipathways.org/instance/WP1376_r117985 http://rdf.wikipathways.org/Pathway/WP1376_r117985/DataNode/eaa (TYK2)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4

http://classic.wikipathways.org/instance/WP1376_r117985 crebbpb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1376_r117985 LOC563639 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1376_r117985 LOC792354 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1376_r117985 LOC566983 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping