wikipathways-collection

WikiPathways WP1344

• WikiPathways: WP1344 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 27
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 27

• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/aea63 (CBP)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/f73f8 (CCND3)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/db94e (CTBP2)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/f213a (CTNND1)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/aa2b8 (ESRRB)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/cd8db (FOXD3)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/e95fe (FRAT1)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/a6fef (FZD10)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/e6d5a (FZD7)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/a0f7c (FZD8)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/e32d5 (FZD9)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/d77d4 (Groucho)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/a1fa1 (MMP7)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/cdee2 (MYC)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/ec6cf (NANOG)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/a98c3 (NFYA)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/c82bd (NLK)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/c53ab (P300)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/ad9c8 (PLAU)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/dac8b (POU5F1)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/c8894 (PPM1J)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/c34f7 (PPP2R1A)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/fb070 (PRKCD)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/e158a (Prkcc)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/b63aa (TCF7)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/c4632 (TCF7L1)
• http://classic.wikipathways.org/instance/WP1344_r115731 http://rdf.wikipathways.org/Pathway/WP1344_r115731/DataNode/b6a73 (TCF7L2)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 3

http://classic.wikipathways.org/instance/WP1344_r115731 LOC100335012 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1344_r115731 LOC100333651 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1344_r115731 zgc:153713 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping