wikipathways-collection

WikiPathways WP1338

• WikiPathways: WP1338 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 36
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 5
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 36

• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/b10 (AGTR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/f70 (AGTR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/bb0 (ATP8A1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/bf1 (AVPR1A)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/db2 (AVPR1B)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/ad5 (AVPR2)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/d9b (BRS3)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/c48 (CCKBR)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/ca8 (CCR-9)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/e92 (CCR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/ff5 (CCR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/f49 (CCR10)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/e58 (CCR2)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/fb2 (CCR3)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/a4e (CCR5)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/fff (CCR6)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/c6e (CCR8)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/c67 (CX3CR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/b54 (CXCR4)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/db8 (CXCR6)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/a71 (FPR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/bac (FPRL1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/bb5 (FPRL2)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/fbd (FY)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/a55 (GALR3)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/c69 (GHSR)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/d93 (GNRHR)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/b61 (NPY5R)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/f57 (NPY6R)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/b37 (NTSR2)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/e64 (OXTR)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/d9d (Oxytocin)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/ad8 (TAC4)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/a6e (TACR1)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/d51 (TACR3)
• http://classic.wikipathways.org/instance/WP1338_r88301 http://rdf.wikipathways.org/Pathway/WP1338_r88301/DataNode/daf (TRHR)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 5

http://classic.wikipathways.org/instance/WP1338_r88301 LOC797181 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1338_r88301 LOC100004831 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1338_r88301 LOC100005361 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1338_r88301 NPY2R with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1338_r88301 LOC566521 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping