wikipathways-collection

WikiPathways WP1331

• WikiPathways: WP1331 (classic)
• Species: Danio rerio

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 32
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 6
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 32

• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/bf0 (ADPN)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/b5f (ASIP)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/c96 (C10orf70)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/a2d (DDIT3)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/c97 (DLK1)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/bcc (FOXC2)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/cac (HMGA1)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/fcb (IL6)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/c01 (IRS2)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/f98 (IRS3L)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/f41 (IRS4)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/f23 (LIF)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/f69 (LIFR)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/ecb (LIPE)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/f06 (LPIN3)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/a7f (MIXL1)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/d8a (NDN)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/cf3 (NRIP1)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/af3 (OSM)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/dfc (PBEF1)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/bf6 (PRLR)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/b4c (RARA)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/fe1 (RETN)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/efd (RXRG)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/c11 (SFRP4)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/ed2 (SLC2A4)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/b9f (SOCS3)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/a05 (STAT5A)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/bae (STAT5B)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/e4f (TNF)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/dc3 (TWIST1)
• http://classic.wikipathways.org/instance/WP1331_r101904 http://rdf.wikipathways.org/Pathway/WP1331_r101904/DataNode/d38 (UCP1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 6

http://classic.wikipathways.org/instance/WP1331_r101904 LOC566983 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1331_r101904 LOC557385 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1331_r101904 LOC100001938 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1331_r101904 FZD1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1331_r101904 LOC797300 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1331_r101904 LOC567485 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping