wikipathways-collection

WikiPathways WP1309

• WikiPathways: WP1309 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 11
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 17
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 11

• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/a75ab (IFNA10)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/c7f28 (IFNA14)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/b26f3 (IFNA16)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/be389 (IFNA17)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/bc8f8 (IFNA21)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/f9a8e (IFNA6)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/bb331 (IFNA7)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/aaaf8 (IFNA8)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/efad0 (IFNAR2)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/eb8d2 (IL8)
• http://classic.wikipathways.org/instance/WP1309_r72183 http://rdf.wikipathways.org/Pathway/WP1309_r72183/DataNode/aa89e (TICAM1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 17

http://classic.wikipathways.org/instance/WP1309_r72183 Pik3cb with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 IFNA1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Traf3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Stat1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Tirap with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 MAP3K7IP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Mapk11 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 IFNA2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 IFNA13 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Irak1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Map2k2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Casp8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Mapk12 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 TLR9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Irak4 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Tbk1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1309_r72183 Myd88 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping