wikipathways-collection

WikiPathways WP1286

• WikiPathways: WP1286 (classic)
• Species: Rattus norvegicus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 61
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 13
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 61

• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b0fd9 (AKR1C2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/cfe43 (AKR1C3)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/dddc8 (AKR1C4)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d09ef (Aldo-keto reductase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b271f (Amino acid acyltransferase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/bc661 (CYP27C1)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/fee8f (CYP2A13)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/bcbb6 (CYP2A6)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b28ff (CYP2A7)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b74cc (CYP2B6)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/c142b (CYP2C18)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b7614 (CYP2C19)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/e10f0 (CYP2C8)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/be11f (CYP2C9)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/a8b6c (CYP2D6)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/f881e (CYP2J2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/eb0ba (CYP3A4)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/f4f7e (CYP3A43)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/f6ec4 (CYP3A5)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d40d0 (CYP3A7)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/aba70 (CYP450)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/c163b (CYP4F11)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/ba269 (CYP4F12)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d577b (CYP4F2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/e86b1 (CYP4F8)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/becb6 (CYP4V2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/dd427 (CYP4Z1)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/a388e (Flavin monooxygenase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d60cc (GAL3ST1)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/c178e (GLYATL1)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/c4d0c (GLYATL2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b7eb8 (GSTA1)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/a0547 (GSTA5)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/da3c4 (Glucuronosyltransferase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/e866f (Glutathione transferase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d0c80 (Methyltransferase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b435b (N-acetyltransferase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/bee66 (NAT6)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/e1a22 (SULT1C1)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/bd1c9 (SULT1C4)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/c140c (Substrate-Aa)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/dad5e (Substrate-Ac)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/c1c2a (Substrate-CH3)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/dd65e (Substrate-Gl)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b3747 (Substrate-NH2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d5432 (Substrate-O-R)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/db566 (Substrate-OH)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/f7f74 (Substrate-SG)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/a4ec8 (Substrate-SH)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/e8313 (Substrate-SO3H)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/be8c4 (Substrate=O)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/a0c55 (Sulfotransferase)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b8cec (UGT1A10)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/b0998 (UGT1A7)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/cf3f7 (UGT2A2)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d440f (UGT2B11)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/d41d3 (UGT2B15)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/eafaa (UGT2B28)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/bac7d (UGT2B4)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/ce1c0 (UGT2B7)
• http://classic.wikipathways.org/instance/WP1286_r125510 http://rdf.wikipathways.org/Pathway/WP1286_r125510/DataNode/f7f9c (Xenobiotic substrate)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 13

http://classic.wikipathways.org/instance/WP1286_r125510 Ugt1a1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 GSTA3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 Ugt1a6 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 Ugt1a3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 CYP27B1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 SULT1C2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 Ugt1a5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 Ugt1a2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 SULT4A1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 GSTA2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 UGT1A9 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 GPX2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1286_r125510 GSTA4 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping