wikipathways-collection

WikiPathways WP1272

• WikiPathways: WP1272 (classic)
• Species: Mus musculus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 44
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 44

• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/a69dc (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/ace37 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/ae566 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/b42b4 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/b88a7 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/bccb9 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/bcf76 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/bef73 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/bf2a6 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/c2a00 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/c6347 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/cb0d2 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/cb984 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/d7bc0 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/d846e (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/dafe9 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/dcb6e (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/dd65f (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/decf6 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/e0e0a (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/e1920 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/e822b (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/e8e79 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/ef655 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/fc57f (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/fd183 (B)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/d4ce6 (Endoperoxidase)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/d2efc (IE)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/f76ea (IE)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/e8079 (PGFS)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/a4616 (PGG3)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/daded (PGH3)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/a7bfd (RNS)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/be3f3 (SOD)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/acca9 (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/afd3d (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/ccaad (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/dc918 (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/f3fa9 (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/fad98 (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/ff58a (T)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/decd4 (TN)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/e051a (TN)
• http://classic.wikipathways.org/instance/WP1272_r120916 http://rdf.wikipathways.org/Pathway/WP1272_r120916/DataNode/cc070 (d4 desaturase)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1

http://classic.wikipathways.org/instance/WP1272_r120916 T with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping