wikipathways-collection
WikiPathways WP1241
- WikiPathways: WP1241 (classic)
- Species: Mus musculus
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests
- entrezGeneIdentifiersNotNumber: .. all OK!
- affyProbeIdentifiersNotCorrect: .. all OK!
- outdatedIdentifiers: …. all OK!
- nonNumericHGNCAccessionNumbers: .. all OK!
- genesWithoutEnsemblMapping: .x we found 1 problem(s):
- GeneralTests: all 15 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 14 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 4 tests OK!
Summary
- Number of test classes: 20
- Number of tests: 118
- Number of assertions: 237
- Number of fails: 2
Fails
Data nodes without an identifier
The following DataNodes have no identifier: 10
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/b01d8 (Substrate)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/ab7f3 (UGT)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/f7048 (UGT1A6)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/f4d99 (UGT1A7)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/e0f0c (UGT2B11)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/a64db (UGT2B15)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/d5e95 (UGT2B17)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/fc5ba (UGT2B28)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/b97e1 (UGT2B7)
- http://classic.wikipathways.org/instance/WP1241_r106835 http://rdf.wikipathways.org/Pathway/WP1241_r106835/DataNode/bd8c5 (substrate-glucuronide)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Genes with identifier but no Ensembl identifier mapping
The following genes with an identifier have been found but that do not have a mapping to Ensembl: 1
http://classic.wikipathways.org/instance/WP1241_r106835 Ugt1a9 with datasource Entrez Gene
More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping