wikipathways-collection

WikiPathways WP1239

• WikiPathways: WP1239 (classic)
• Species: Anopheles gambiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 29
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 6
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 29

• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/ae9 (FAU)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/f76 (RPL10)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/f81 (RPL12)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/fd8 (RPL13A)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/bf1 (RPL18A)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/afa (RPL21)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/b24 (RPL29)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/f25 (RPL31)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/dbc (RPL36)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/d68 (RPL36A)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/f39 (RPL39)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/fe2 (RPL3L)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/e30 (RPL41)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/b2c (RPL7)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/aa3 (RPL7A)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/e61 (RPL9)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/eae (RPS12)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/a79 (RPS14)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/c67 (RPS15A)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/b91 (RPS23)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/f16 (RPS24)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/f94 (RPS27A)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/ac3 (RPS4Y1)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/cdf (RPS6KA1)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/cb5 (RPS6KA2)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/c8e (RPS6KA6)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/ff0 (RPS6KB2)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/dab (RPS8)
• http://classic.wikipathways.org/instance/WP1239_r117043 http://rdf.wikipathways.org/Pathway/WP1239_r117043/DataNode/b42 (RPSA)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 6

http://classic.wikipathways.org/instance/WP1239_r117043 AgaP_AGAP010252 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1239_r117043 AgaP_AGAP010216 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1239_r117043 AgaP_AGAP010375 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1239_r117043 AgaP_AGAP003556 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1239_r117043 AgaP_AGAP007927 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1239_r117043 AgaP_AGAP009031 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping