wikipathways-collection

WikiPathways WP1227

• WikiPathways: WP1227 (classic)
• Species: Anopheles gambiae

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 7
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 7
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 7

• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/f4b6c (PDHA2)
• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/a788d (PDHX)
• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/d1200 (PDK1)
• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/c715a (PDK2)
• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/a54eb (PDK4)
• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/f9915 (PDP2)
• http://classic.wikipathways.org/instance/WP1227_r117225 http://rdf.wikipathways.org/Pathway/WP1227_r117225/DataNode/da75d (alpha-Ketoglutarate)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 7

http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP011629 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP007852 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP009510 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP007975 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP010421 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP008349 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1227_r117225 AgaP_AGAP010276 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping