wikipathways-collection

WikiPathways WP117

• WikiPathways: WP117 (classic)
• Species: Homo sapiens
• Scholia: WP117

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 1

Fails

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14

http://classic.wikipathways.org/instance/WP117_r117743 OR7E35P with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 OR51A1P with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 HSA12 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP117_r117743 Q9H2C7 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP117_r117743 OR1E3P with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 OR7E19P with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 O60411 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP117_r117743 CCR2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 OR7E18P with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 HSA10 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP117_r117743 OR5D3 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP117_r117743 OR1J5 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP117_r117743 P47889 with datasource UniProtKB
http://classic.wikipathways.org/instance/WP117_r117743 Q9BYT4 with datasource UniProtKB

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping