wikipathways-collection

WikiPathways WP1129

• WikiPathways: WP1129 (classic)
• Species: Canis familiaris

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 14
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 14

• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/cd8db (FOXD3)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/a6fef (FZD10)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/a0f7c (FZD8)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/d77d4 (Groucho)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/f4854 (MAP3K7)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/ec6cf (NANOG)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/a98c3 (NFYA)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/c8894 (PPM1J)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/dabc1 (PPP2R3B)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/ecb1c (PPP2R5C)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/e158a (Prkcc)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/b63aa (TCF7)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/b6a73 (TCF7L2)
• http://classic.wikipathways.org/instance/WP1129_r117465 http://rdf.wikipathways.org/Pathway/WP1129_r117465/DataNode/bda88 (WNT16)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4

http://classic.wikipathways.org/instance/WP1129_r117465 LOC100855544 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1129_r117465 FRAT1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1129_r117465 SOX2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1129_r117465 FZD7 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping