wikipathways-collection

WikiPathways WP1126

• WikiPathways: WP1126 (classic)
• Species: Canis familiaris

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 50
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 50

• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c23 (1.1.1.110)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/df5 (1.1.1.190)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ff6 (1.1.1.191)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c40 (1.10.3.4)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/bbf (1.13.11.-)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ac5 (1.13.11.10)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/cd4 (1.13.11.17)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c09 (1.13.11.23)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/fc6 (1.13.12.3)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/fd7 (1.13.99.3)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/d6e (1.14.13.9)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ae4 (1.14.16.-)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/f49 (1.14.16.3)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c9c (1.14.99.2)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/fb3 (1.2.1.-)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/cda (1.2.1.32)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c27 (1.2.3.7)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/eb5 (1.3.1.18)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ed3 (1.4.3.2)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/b19 (1.5.1.-)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/b51 (1.7.3.2)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c01 (2.1.1.47)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/f2e (2.1.1.49)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/a6b (2.6.1.27)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/cca (2.6.1.27)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/f9f (2.6.1.27)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/d00 (3.2.1.147)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/e53 (3.5.1.4)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/e17 (3.5.1.49)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ff1 (3.5.1.9)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/e30 (3.5.5.1)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/d88 (3.5.99.5)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ac3 (4.1.1.-)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/c59 (4.1.1.43)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/d0a (4.1.99.1)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/a20 (4.2.1.84)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/dce (Aldh1a4)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/f92 (Aldh1a4)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/cdc8a (Benzoate degradation via hydroxylation)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/bd5 (CYP3A4)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/a04 (CYP4F12)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/f1b (Cyp2a1)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/fde (Cyp2a2)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/dbd (Cyp2b15)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/e4a (Cyp2c12)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/f8d (Cyp2c39)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/ace (Cyp2d2)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/dd9 (INMT)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/be542 (Nicotinate and nicotinamide metabolism)
• http://classic.wikipathways.org/instance/WP1126_r122665 http://rdf.wikipathways.org/Pathway/WP1126_r122665/DataNode/e336c (Phenylalanine, Tyrosine and Tryptophan metabolism)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 4

http://classic.wikipathways.org/instance/WP1126_r122665 AOX1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1126_r122665 ABP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1126_r122665 ALDH3A2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1126_r122665 AFMID with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping