wikipathways-collection

WikiPathways WP1096

• WikiPathways: WP1096 (classic)
• Species: Canis familiaris

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 13
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests
  • entrezGeneIdentifiersNotNumber: .. all OK!
  • affyProbeIdentifiersNotCorrect: .. all OK!
  • outdatedIdentifiers: …. all OK!
  • nonNumericHGNCAccessionNumbers: .. all OK!
  • genesWithoutEnsemblMapping: .x we found 1 problem(s):
    • The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14
• GeneralTests: all 15 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 14 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 118
• Number of assertions: 237
• Number of fails: 2

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 13

• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/aa0 (CBL)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/f70 (CEBPA)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/f81 (CEBPB)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/fab (CRK)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/cc5 (GRB10)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/c84 (HIST3H3)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/ccc (HRAS)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/d1b (MAP2K5)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/b19 (PTK6)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/a6a (SNRPD2)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/a47 (STXBP1)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/e1a (STXBP1)
• http://classic.wikipathways.org/instance/WP1096_r117445 http://rdf.wikipathways.org/Pathway/WP1096_r117445/DataNode/b47 (TGIF)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Genes with identifier but no Ensembl identifier mapping

The following genes with an identifier have been found but that do not have a mapping to Ensembl: 14

http://classic.wikipathways.org/instance/WP1096_r117445 SH3BGRL with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 PRKCG with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 PIK3R3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 KRT17 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 SH3KBP1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 CDC42 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 RBBP7 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 RIPK1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 EPPK1 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 MAP2K2 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 KRT8 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 MAPK3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 RPS6KA3 with datasource Entrez Gene
http://classic.wikipathways.org/instance/WP1096_r117445 SOCS1 with datasource Entrez Gene

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneTests/genesWithoutEnsemblMapping