wikipathways-collection

WikiPathways WP1045

• WikiPathways: WP1045 (classic)
• Species: Bos taurus

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 6
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 5 tests OK!
• GeneralTests
  • curationAndHypothetical: .. all OK!
  • curationAndNeedsWork: .. all OK!
  • curationAndReactome: .. all OK!
  • dataNodeWithoutGraphId: .. all OK!
  • duplicateTitles: .. all OK!
  • emptyDataSources: . all OK!
  • emptyLabelOfNodeWithIdentifier: .. all OK!
  • groupsHaveDetail: .. all OK!
  • noTags: .. all OK!
  • nullDataSources: .. all OK!
  • stockComments: .x we found 1 problem(s):
    • Number of graphical items with the comment “Type your comment here”: 2
  • titlesShortEnough: .. all OK!
  • undefinedDataSources: .. all OK!
  • undefinedIdentifier: .. all OK!
  • weirdCharacterTitles: .. all OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests
  • deletedPathways: .. all OK!
  • linksToDeletedPathways: .. all OK!
  • linksToDeletedPathways_All: .. all OK!
  • speciesMismatch: .. all OK!
  • testRoundedRectangle: .. all OK!
  • youMustCite: .. all OK!
  • oldLicenses: .. all OK!
  • mediawikiLinks: .x we found 1 problem(s):
    • Pathways of which the description may contain MediaWiki-style links: 1
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 4 tests OK!

Summary

• Number of test classes: 20
• Number of tests: 120
• Number of assertions: 241
• Number of fails: 3

Fails

Data nodes without an identifier

The following DataNodes have no identifier: 6

• http://classic.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/DataNode/a7243 (DCP1A)
• http://classic.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/DataNode/cf618 (EID2)
• http://classic.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/DataNode/efabc (JUND)
• http://classic.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/DataNode/c87ff (MMP12)
• http://classic.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/DataNode/dd5e5 (PIK3R2)
• http://classic.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/DataNode/b11af (PJA1)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

The pathway contains stock comments

Number of graphical items with the comment “Type your comment here”: 2

• http://www.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/Interaction/a2036
• http://www.wikipathways.org/instance/WP1045_r117635 http://rdf.wikipathways.org/Pathway/WP1045_r117635/Interaction/c8fce

More details at https://www.wikipathways.org/WikiPathwaysCurator/GeneralTests/stockComments

PathwayTests.mediawikiLinks

Pathways of which the description may contain MediaWiki-style links: 1

[["homepage"],
["http://classic.wikipathways.org/instance/WP1045_r117635"]
]