sr24-curation

WikiPathways WP5504

• WikiPathways: WP5504 (classic)
• Species: Homo sapiens
• Scholia: WP5504

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 16
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 1
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 16

http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/bc7ea
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/a10a8
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dc157
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/c22d1
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/a47fe
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/ComplexBinding/da100
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dca9b
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/d6dae
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/ce009
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/af333
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dbf59
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/eca30
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/ComplexBinding/c3635
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/b7377
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/ffbfa
http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/e5bc2

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 1

https://identifiers.org/wikipathways/WP5504 has an metabolite not linked to an interaction: biotin

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP5504_r136157 "Mitochondrial
Membrane
Potential" with graphId fbd15
http://classic.wikipathways.org/instance/WP5504_r136157 "Mitophagy
regulation" with graphId dae41