sr24-curation

WikiPathways WP5504

• WikiPathways: WP5504 (classic)
• Species: Homo sapiens
• Scholia: WP5504

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 16
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 1
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

Interactions without references

Interactions without literature references: 16

• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/bc7ea
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/a10a8
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dc157
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/c22d1
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/a47fe
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/ComplexBinding/da100
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dca9b
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/d6dae
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/ce009
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/af333
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dbf59
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/eca30
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/ComplexBinding/c3635
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/b7377
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/ffbfa
• http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/e5bc2

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

All metabolites are involved in interactions

Found metabolites without interaction: 1

• https://identifiers.org/wikipathways/WP5504 has an metabolite not linked to an interaction: biotin

More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract

Interactions with Labels

Interactions found that involve Labels: 2

• http://classic.wikipathways.org/instance/WP5504_r136157 “Mitochondrial Membrane Potential” with graphId fbd15
• http://classic.wikipathways.org/instance/WP5504_r136157 “Mitophagy regulation” with graphId dae41

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels