sr24-curation

WikiPathways WP534

• WikiPathways: WP534 (classic)
• Species: Homo sapiens
• Scholia: WP534

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 79
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 7
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 2

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 79

http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/baa72
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ef79c
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a7962
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a5027
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f15fe_2
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/idc75434d8
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e3c06
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b296a
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/bb254
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/be938
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ac25d
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a0c40
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/d8a39
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ba365
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/cd2b8
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a525b
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b6539
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/id55224678
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f0349
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/de534
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/ComplexBinding/ebf7e
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e02c2
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/d6411
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/eebba
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/af8b3
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ccb87
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f3159
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f18e0
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/eb4c7
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e00b1_1
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/d7f59
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/ComplexBinding/bebdc
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c430a
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a040c
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ba23e
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e66c3
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/cb789
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/fb617
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/dc2e0
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/d6bda
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ea8dd
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f15fe_1
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/bebf9
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ecfe3
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f07fa
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e00b1_2
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/dceab
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b2208_1
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f3a78
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e27b0
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c182b
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f94fb
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/ComplexBinding/e13bc
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b9868
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b2208_2
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f6b40
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/bd657
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/idc4747d5
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/dcd0f
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e232b
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/cbbda
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f30e9
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/fef3f
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/ComplexBinding/e189e
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a2e86
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b3739
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a82c6
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/idaec1e20e
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/da548
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c5d08
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c6fe6
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/eac87
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/edf29
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c4ad7
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c61c6
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c96e5
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/c5bcc
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f85be
http://classic.wikipathways.org/instance/WP534_r128076 -> http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/f2293

Possible MIM translocation

Interactions between identical nodes: 7

http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a7962 "Pyruvate" (https://identifiers.org/hmdb/HMDB0000243) and 
Pyruvate" (https://identifiers.org/hmdb/HMDB0000243)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ba365 "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e00b1_1 "Aspartate" (https://identifiers.org/hmdb/HMDB0000191) and 
Aspartate" (https://identifiers.org/hmdb/HMDB0000191)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ea8dd "Glucose" (https://identifiers.org/hmdb/HMDB0000122) and 
Glucose" (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e00b1_2 "Aspartate" (https://identifiers.org/hmdb/HMDB0000191) and 
Aspartate" (https://identifiers.org/hmdb/HMDB0000191)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b2208_1 "Malate" (https://identifiers.org/hmdb/HMDB0000744) and 
Malate" (https://identifiers.org/hmdb/HMDB0000744)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b2208_2 "Malate" (https://identifiers.org/hmdb/HMDB0000744) and 
Malate" (https://identifiers.org/hmdb/HMDB0000744)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations