sr24-curation

WikiPathways WP534

WikiPathways: WP534 (classic)
Species: Homo sapiens
Scholia: WP534
Tests
CASMetabolitesTests: all 2 tests OK!
ChEBIMetabolitesTests: all 5 tests OK!
ChemSpiderTests: all 2 tests OK!
CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
  - Interactions without literature references: 79
- missingHGNC: .. all OK!
DataNodesTests: all 5 tests OK!
EnsemblTests: all 5 tests OK!
GeneTests: all 4 tests OK!
GeneralTests: all 15 tests OK!
HMDBMetabolitesTests: all 2 tests OK!
HMDBSecMetabolitesTests: all 3 tests OK!
IEMPathwayTests: all 6 tests OK!
InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .. all OK!
- possibleTranslocations: .x we found 1 problem(s):
  - Interactions between identical nodes: 7
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
KEGGMetaboliteTests: all 2 tests OK!
LIPIDMAPSTests: all 1 tests OK!
MetaboliteStructureTests: all 1 tests OK!
MetabolitesTests: all 15 tests OK!
OudatedDataSourcesTests: all 24 tests OK!
PathwayTests: all 7 tests OK!
ProteinsTests: all 2 tests OK!
PubChemMetabolitesTests: all 3 tests OK!
ReferencesTests: all 6 tests OK!
UniProtTests: all 5 tests OK!
WikidataTests: all 15 tests OK!

Summary

Number of test classes: 23
Number of tests: 140
Number of assertions: 281
Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 79

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Possible MIM translocation

Interactions between identical nodes: 7

http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/a7962 “Pyruvate” (https://identifiers.org/hmdb/HMDB0000243) and Pyruvate” (https://identifiers.org/hmdb/HMDB0000243)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ba365 “Glucose” (https://identifiers.org/hmdb/HMDB0000122) and Glucose” (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e00b1_1 “Aspartate” (https://identifiers.org/hmdb/HMDB0000191) and Aspartate” (https://identifiers.org/hmdb/HMDB0000191)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/ea8dd “Glucose” (https://identifiers.org/hmdb/HMDB0000122) and Glucose” (https://identifiers.org/hmdb/HMDB0000122)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/e00b1_2 “Aspartate” (https://identifiers.org/hmdb/HMDB0000191) and Aspartate” (https://identifiers.org/hmdb/HMDB0000191)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b2208_1 “Malate” (https://identifiers.org/hmdb/HMDB0000744) and Malate” (https://identifiers.org/hmdb/HMDB0000744)
http://classic.wikipathways.org/instance/WP534_r128076 http://rdf.wikipathways.org/Pathway/WP534_r128076/WP/Interaction/b2208_2 “Malate” (https://identifiers.org/hmdb/HMDB0000744) and Malate” (https://identifiers.org/hmdb/HMDB0000744)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations