sr24-curation
WikiPathways WP5178
- WikiPathways: WP5178 (classic)
- Species: Homo sapiens
- Scholia: WP5178
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
- missingHGNC: .. all OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 5 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 15 tests OK!
- HMDBMetabolitesTests: all 2 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- IEMPathwayTests
- allMetabolitesInteract: .x we found 1 problem(s):
- metabolicConversions: .. all OK!
- catalystsWithCommonDataSource: .. all OK!
- metabolicConversionIdentifiersCommon: .. all OK!
- diseasesHaveIdentifiers: .. all OK!
- omimIdentifiers: .. all OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .x we found 1 problem(s):
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 15 tests OK!
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 15 tests OK!
Summary
- Number of test classes: 23
- Number of tests: 140
- Number of assertions: 281
- Number of fails: 4
Fails
CovidDiseaseMapsTests.interactionsWithoutReferences
Interactions without literature references: 21
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id2943e1d0
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id92a3d684
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id3a7d5881
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/ide7bc322
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idf6e74140
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id786f82e3
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idbbd3b96c
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idfaf3d965
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id20c278e1
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id131d5722
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id87617ee3
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id4ba3a08f
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id834409db
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idbf2ba389
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idb8f00d5f
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idb199c6df
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id7072e443_1
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idbd4d1a2a
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id7072e443_2
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id4a0403c5
http://classic.wikipathways.org/instance/WP5178_r134494 -> http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idac4df07f
IEMPathwayTests.allMetabolitesInteract
Found metabolites without interaction: 3
https://identifiers.org/wikipathways/WP5178 has an metabolite not linked to an interaction: Frc-1-P
https://identifiers.org/wikipathways/WP5178 has an metabolite not linked to an interaction: Dihydroxyacetone-P
https://identifiers.org/wikipathways/WP5178 has an metabolite not linked to an interaction: Sucrose
InteractionTests.interactionsWithLabels
Interactions found that involve Labels: 23
http://classic.wikipathways.org/instance/WP5178_r134494 "Retinitis pigmentosa 79" with graphId ffa6b
http://classic.wikipathways.org/instance/WP5178_r134494 "Sorbitol dehydrogenase deficiency
with peripheral neuropathy" with graphId ef2de
http://classic.wikipathways.org/instance/WP5178_r134494 "Glucose-6-phosphatase
deficiency" with graphId b1b23
http://classic.wikipathways.org/instance/WP5178_r134494 "" with graphId a6339
http://classic.wikipathways.org/instance/WP5178_r134494 "Catalysis" with graphId a7fac
http://classic.wikipathways.org/instance/WP5178_r134494 "Fructose-1,6-biphosphatase
deficiency" with graphId f3427
http://classic.wikipathways.org/instance/WP5178_r134494 "NEDVIBA" with graphId e6b46
http://classic.wikipathways.org/instance/WP5178_r134494 "Ketohexokinase
deficiency" with graphId e55be
http://classic.wikipathways.org/instance/WP5178_r134494 "" with graphId f708f
http://classic.wikipathways.org/instance/WP5178_r134494 "alternative conversion or conversion
in alternative entry" with graphId db4d3
http://classic.wikipathways.org/instance/WP5178_r134494 "Glucose phosphate isomerase
deficiency" with graphId b9270
http://classic.wikipathways.org/instance/WP5178_r134494 "Aldolase B
deficiency" with graphId b7faa
http://classic.wikipathways.org/instance/WP5178_r134494 "Intestinal glucose-galactose
malabsorption" with graphId aaf8e
http://classic.wikipathways.org/instance/WP5178_r134494 "Glycerate kinase
deficiency" with graphId b83c3
http://classic.wikipathways.org/instance/WP5178_r134494 "HMSNR" with graphId b8b74
http://classic.wikipathways.org/instance/WP5178_r134494 "Fanconi-Bickel syndrome" with graphId b262a
http://classic.wikipathways.org/instance/WP5178_r134494 "connection to
disease" with graphId a96b3
http://classic.wikipathways.org/instance/WP5178_r134494 "" with graphId a09d4
http://classic.wikipathways.org/instance/WP5178_r134494 "Triosephosphate isomerase
deficiency" with graphId c3189
http://classic.wikipathways.org/instance/WP5178_r134494 "Phosphoglucomutase 1
deficiency" with graphId bd5eb
http://classic.wikipathways.org/instance/WP5178_r134494 "" with graphId d7103
http://classic.wikipathways.org/instance/WP5178_r134494 "conversion" with graphId f7775
http://classic.wikipathways.org/instance/WP5178_r134494 "Hexokinase deficiency" with graphId b592e
Possible MIM translocation
Interactions between identical nodes: 10
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id92a3d684 "Fructose" (https://identifiers.org/chebi/CHEBI:28645) and
Fructose" (https://identifiers.org/chebi/CHEBI:28645)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id20c278e1 "Sorbitol" (https://identifiers.org/chebi/CHEBI:30911) and
Sorbitol" (https://identifiers.org/chebi/CHEBI:30911)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id131d5722 "Glc" (https://identifiers.org/chebi/CHEBI:17234) and
Glc" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id131d5722 "Glc" (https://identifiers.org/chebi/CHEBI:17234) and
Glucose" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id131d5722 "Glucose" (https://identifiers.org/chebi/CHEBI:17234) and
Glc" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/id131d5722 "Glucose" (https://identifiers.org/chebi/CHEBI:17234) and
Glucose" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idb199c6df "Glc" (https://identifiers.org/chebi/CHEBI:17234) and
Glc" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idb199c6df "Glc" (https://identifiers.org/chebi/CHEBI:17234) and
Glucose" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idb199c6df "Glucose" (https://identifiers.org/chebi/CHEBI:17234) and
Glc" (https://identifiers.org/chebi/CHEBI:17234)
http://classic.wikipathways.org/instance/WP5178_r134494 http://rdf.wikipathways.org/Pathway/WP5178_r134494/WP/Interaction/idb199c6df "Glucose" (https://identifiers.org/chebi/CHEBI:17234) and
Glucose" (https://identifiers.org/chebi/CHEBI:17234)
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations