WikiPathways WP5176
- WikiPathways: WP5176 (classic)
- Species: Homo sapiens
- Scholia: WP5176
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
- missingHGNC: .. all OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 5 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 15 tests OK!
- HMDBMetabolitesTests: all 2 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- IEMPathwayTests
- allMetabolitesInteract: .x we found 1 problem(s):
- metabolicConversions: .. all OK!
- catalystsWithCommonDataSource: .. all OK!
- metabolicConversionIdentifiersCommon: .. all OK!
- diseasesHaveIdentifiers: .. all OK!
- omimIdentifiers: .. all OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .x we found 1 problem(s):
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests
- metaboliteAlsoOtherType: .. all OK!
- casNumbersNotMarkedAsMetabolite: .. all OK!
- chemspiderIDsNotMarkedAsMetabolite: .. all OK!
- HMDBIDsNotMarkedAsMetabolite: .. all OK!
- KEGGIDsNotMarkedAsMetabolite: .. all OK!
- metabolitesWithAnEnsembleID: .. all OK!
- metabolitesWithAnEntrezGeneID: .. all OK!
- metabolitesWithDbButNoIdentifier: .. all OK!
- metabolitesWithIdentifierButNoDb: .. all OK!
- ChEBIIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotMarkedAsMetabolite: .. all OK!
- PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotNumbers: .. all OK!
- PubChemSubstanceIDsNotNumbers: .. all OK!
- tooManyInChIKeys: .x we found 1 problem(s):
- OudatedDataSourcesTests: all 24 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 15 tests OK!
Summary
- Number of test classes: 23
- Number of tests: 140
- Number of assertions: 281
- Number of fails: 6
Fails
Interactions without references
Interactions without literature references: 36
More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences
Data nodes without an identifier
The following DataNodes have no identifier: 1
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Found metabolites without interaction: 22
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3α,7α,12α-trihydroxy-24-oxo-5β-cholestan-26-oyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: (25S)-3alpha,7alpha-Dihydroxy-5beta-cholestanoyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 7alpha,26-dihydroxycholest-4-en-3-one
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha-dihydroxy-24-oxo-5beta-cholestan-26-oyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: Taurine
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 5beta-cholestane-3alpha,7alpha,12alpha,26-tetrol
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 7-alpha-Hydroxycholesterol
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-oic acid
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha-Dihydroxy-5beta-cholest-24-enoyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 27-Hydroxycholesterol
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3beta,7alpha-Dihydroxy-5-cholestenoate
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 5beta-Cholestane-3alpha,7alpha,27-triol
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: (25S)-3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: cholyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: Chenodeoxycholoyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha,12alpha-trihydroxy-5beta-cholestan-26-al
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: (24R,25R)-3alpha,7alpha,12alpha,24-tetrahydroxy -5beta-cholestan-26-oyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha-dihydroxy-5beta-cholestan-26-al
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha,12alpha-Trihydroxy-5beta-cholest-24-enoyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: (25R)-3alpha,7alpha,12alpha-Trihydroxy-5beta-cholestan-26-oyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3alpha,7alpha,24-trihydroxy -5beta-cholestan-26-oyl-CoA
- https://identifiers.org/wikipathways/WP5176 has an metabolite not linked to an interaction: 3beta-Hydroxy-5-cholestenoic acid
More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract
Interactions with Labels
Interactions found that involve Labels: 23
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels
Possible MIM translocation
Interactions between identical nodes: 18
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations
Too many InChIKeys for the used identifier
Non-zero count of metabolites with more than one InChIKey: 10
- http://classic.wikipathways.org/instance/WP5176_r128232 has: cholyl-CoA (CHEBI:15519) with InChIKeys:
ZKWNOTQHFKYUNU-TVKZAFKCSA-N, ZKWNOTQHFKYUNU-JGCIYWTLSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: Bilirubin glucuronide (CHEBI:16427) with InChIKeys:
ARBDURHEPGRPSR-GEADQAOESA-N, ARBDURHEPGRPSR-LCNKTQGVSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: Taurochenodeoxycholic acid (CHEBI:16525) with InChIKeys:
BHTRKEVKTKCXOH-BJLOMENOSA-N, AODPIQQILQLWGS-OBRSLYEHSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 7alpha-hydroxy-5beta-cholestan-3-one (CHEBI:2290) with InChIKeys:
HWOOALPDOJHOPO-YREUSXKVSA-N, HWOOALPDOJHOPO-SENDYOAPSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 3α,7α,12α-trihydroxy-24-oxo-5β-cholestan-26-oyl-CoA (CHEBI:27379) with InChIKeys:
AWLXQJGPNLCTLM-YFXOTMPNSA-N, AWLXQJGPNLCTLM-XFQWJXLTSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 3alpha,7alpha-Dihydroxy-5beta-cholest-24-enoyl-CoA (CHEBI:27393) with InChIKeys:
SEBZZAWTQNNGPK-ZAVIOYSRSA-N, SEBZZAWTQNNGPK-YOKOLYSVSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 3alpha,7alpha-dihydroxy-5beta-cholestan-26-al (CHEBI:27428) with InChIKeys:
YWGOKHMOJTZGBN-UGMUFZQESA-N, YWGOKHMOJTZGBN-SBOSHUFNSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 3alpha,7alpha,12alpha-Trihydroxy-5beta-cholest-24-enoyl-CoA (CHEBI:27505) with InChIKeys:
QVDPWQVOSKJUES-SQEGORTJSA-N, QVDPWQVOSKJUES-WYOYJMLVSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 7alpha,12alpha-Dihydroxy-4-cholesten-3-one (CHEBI:28477) with InChIKeys:
VJGNBLOGSXHTLR-JFXJTJEYSA-N, UQPYXHJTHPHOMM-NIBOIBLTSA-N
- http://classic.wikipathways.org/instance/WP5176_r128232 has: 5beta-cholestane-3alpha,7alpha,26-triol (CHEBI:28540) with InChIKeys:
OQIJRBFRXGIHMI-KZQGXEQDSA-N, OQIJRBFRXGIHMI-UGMUFZQESA-N
More details at https://www.wikipathways.org/WikiPathwaysCurator/MetabolitesTests/tooManyInChIKeys