sr24-curation

WikiPathways WP5112

• WikiPathways: WP5112 (classic)
• Species: Homo sapiens
• Scholia: WP5112

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 2
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .. all OK!
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .x we found 1 problem(s):
    • The following DataNodes have Unknown @Type: 2
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 2
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

Interactions without references

Interactions without literature references: 2

• http://classic.wikipathways.org/instance/WP5112_r134576 -> http://rdf.wikipathways.org/Pathway/WP5112_r134576/ComplexBinding/ce290
• http://classic.wikipathways.org/instance/WP5112_r134576 -> http://rdf.wikipathways.org/Pathway/WP5112_r134576/ComplexBinding/e613b

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Datanodes of unknown type

The following DataNodes have Unknown @Type: 2

• http://classic.wikipathways.org/instance/WP5112_r134576 http://rdf.wikipathways.org/Pathway/WP5112_r134576/DataNode/e084f (Familial hyperlipidemia)
• http://classic.wikipathways.org/instance/WP5112_r134576 http://rdf.wikipathways.org/Pathway/WP5112_r134576/DataNode/d9833 (Hyperlipoproteinemia type V)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/unknownTypes

All metabolites are involved in interactions

Found metabolites without interaction: 2

• https://identifiers.org/wikipathways/WP5112 has an metabolite not linked to an interaction: Triglyceride
• https://identifiers.org/wikipathways/WP5112 has an metabolite not linked to an interaction: Phospholipid

More details at https://www.wikipathways.org/WikiPathwaysCurator/IEMPathwayTests/allMetabolitesInteract