sr24-curation

WikiPathways WP4705

• WikiPathways: WP4705 (classic)
• Species: Homo sapiens
• Scholia: WP4705

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 36
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 2
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests
  • keggWithoutMapping: .. all OK!
  • pubchemCIDWithoutMapping: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • casWithoutMapping: .. all OK!
  • wikDataTypo: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • chebiWithoutMapping_Reactome: .. all OK!
  • chebiWithoutMapping: .x we found 1 problem(s):
    • ChEBI identifiers without Wikidata mappings: 2
  • inchikeyWithoutMapping: .. all OK!
  • retiredIdentifiers: .. all OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 36

http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ed0de
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/f413f
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id71c25215
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idf290c8fa
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id31c220f4
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idab62fb7b
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/ComplexBinding/d60b6
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idfd223107
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ide910b442
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id61811f11
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idd45ff29e
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ida930645
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id4a94bff
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/b7745
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/fdacc
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idc52f8c77
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idca056563
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id658e2ed4
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idc12ee2d5
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id28463d3b
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idbbf5b0dd
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ida8bbcb3c
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id7e04d7bc
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id3d85da4c
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/a4121
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/df6a1
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id997e3eb9
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ideda7de2a
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idd096d760
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idc9dfed8a
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id3b4d59a9
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/d980b
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idddca2baf
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ba725
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idbd3bcc46
http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idaffa35d6

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2

http://classic.wikipathways.org/instance/WP4705_r136158 "UV light" with graphId cd31a
http://classic.wikipathways.org/instance/WP4705_r136158 "RNA 
degradation" with graphId ede18

ChEBI identifier without a match in Wikidata

ChEBI identifiers without Wikidata mappings: 2

https://identifiers.org/chebi/CHEBI:74411 (Adenosine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4705_r136158 ; 
https://identifiers.org/chebi/CHEBI:82852 (Inosine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4705_r136158 ; 

More details at https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping