sr24-curation

WikiPathways WP4156

• WikiPathways: WP4156
• Scholia: WP4156
• WPRDF file: wp/Human/WP4156.ttl
• GPMLRDF file: wp/gpml/Human/WP4156.ttl
• SBML file: sbml/WP4156.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 4 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 62
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • metaboliteAlsoOtherType: .. all OK!
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • tooManyInChIKeys: .x we found 1 problem(s):
    • Non-zero count of metabolites with more than one InChIKey: 1
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 120
• Number of assertions: 242
• Number of fails: 2

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 62

http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idaf49de82
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idcfec2bee
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idc7ad578
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id210ea6b1
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idc3ff3f1c
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idd98f6358
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id277f5b5a
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/iddf08bbd6
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id6b39a446
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id9ef7cfc3
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id3c540fa2
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/ideb9fcede
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idcd230f57
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idb7ed86f6
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/c1a93
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idaa1af98f
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/bcf5c
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/f32e5
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id2c686da2
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id9c5562ef
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/ComplexBinding/a765a
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idd7741aaf
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/f78df
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/ComplexBinding/a69e0
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/c06ac
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id1eb5096c
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/cefac
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id24333043
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idf156bc02
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/fe1d8
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/ida9b8e551
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/ide9604c01
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id94aadbf8
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id4876ba83
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/b111a
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idb70c8a5b
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/ca689
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/a780c
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idd348c017
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id790b1035
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/c454a
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/ide4d37224
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id68d7effb
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idab741d7e
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id70f3fdfe
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id3c385ad3
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idd28db677
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/a76fc
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id7326c6e
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id218a73f5
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id5b2cfbca
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idb61b60ed
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id32c71291
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id1826379
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id4e503ef6_2
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/ida371d2ff
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idc788ccbe
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id4e503ef6_1
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idcb6f2385
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/idfc3d6f39
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/f7ae9
http://classic.wikipathways.org/instance/WP4156_r128201 -> http://rdf.wikipathways.org/Pathway/WP4156_r128201/WP/Interaction/id93f579bc

More details at https://wikipathways.github.io/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

MetabolitesTests.tooManyInChIKeys

Non-zero count of metabolites with more than one InChIKey: 1

http://classic.wikipathways.org/instance/WP4156_r128201 (example) has: q-BH2 CHEBI:43120 with InChIKeys: ZHQJVZLJDXWFFX-RPDRRWSUSA-N, ZHQJVZLJDXWFFX-UHFFFAOYSA-N