sr24-curation

WikiPathways WP4022

• WikiPathways: WP4022 (classic)
• Species: Homo sapiens
• Scholia: WP4022

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 110
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 1
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • metaboliteAlsoOtherType: .. all OK!
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • tooManyInChIKeys: .x we found 1 problem(s):
    • Non-zero count of metabolites with more than one InChIKey: 2
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 3

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 110

http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f42e6
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c6946
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ed3a2
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b9a95
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/bcfba
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/df3fc
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e6e47
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ce57f
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id7bedb6c0
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id91c6d1aa
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id109d5d67
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c270d
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/aada6
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id3f2e3852
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idf123377b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f1f78
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/bef68
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d0cb5
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/a7a43
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d99cd
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c8e23
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/de1a8
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ac0f1
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/cb9f4
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id67a61917
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c4370
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/fdb49
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d9869
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f1fb2
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/a1f5b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c2979
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/fff4b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b2fbc
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/aeeca
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idf63600c8
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f2c47
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/a86aa
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id1019d33b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b436e
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e68f9
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id66e2360e
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/eedc8
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id6f004280
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idb4e86ee
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c1a6f
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/dbcac
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id93aa65f9
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b27d0
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e0598
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/cb187
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f1828
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c95d4
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b1f11
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ce038
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f4b74
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d9728
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e0681
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ceae7
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ee04b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idbe7fee1
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/aae8a
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f9892
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ide7df8c76
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ec14f
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e5c64
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idfbe5de85
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d4716
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id37d6fd2a
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d809c
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/cca33
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b481a
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id80c45621
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/faa03
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/efb33
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f6f0d
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idc6385ce2
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c6461
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idc94fc774
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/af67f
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f2910
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e3572
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e6adc
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/df782
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id5f7c2158
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f9d6f
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f6bd4
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/aaa95
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/a5558
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/c1d5b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/cc08c
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ed291
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/cbbde
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ff3e2
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/fdda2
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/cc884
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/fe592
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/id7c1c29fd
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f7270
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/bae0c
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/b4cfb
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e1898
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f645e
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/e5195
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f676d
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/ac54b
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/d58a5
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/f976e
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/idad673158
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/bcacd
http://classic.wikipathways.org/instance/WP4022_r136149 -> http://rdf.wikipathways.org/Pathway/WP4022_r136149/WP/Interaction/acae6

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 1

https://identifiers.org/wikipathways/WP4022 has an metabolite not linked to an interaction: 2-deoxy-D-ribose-1P

MetabolitesTests.tooManyInChIKeys

Non-zero count of metabolites with more than one InChIKey: 2

http://classic.wikipathways.org/instance/WP4022_r136149 (example) has: dTMP C00364 with InChIKeys: GYOZYWVXFNDGLU-XLPZGREQSA-N, QSJFDOVQWZVUQG-KAVNDROISA-N, GYOZYWVXFNDGLU-XLPZGREQSA-L
http://classic.wikipathways.org/instance/WP4022_r136149 (example) has: Orotidine 5'-phosphate C01103 with InChIKeys: KYOBSHFOBAOFBF-XVFCMESISA-N, FKCRAVPPBFWEJD-XVFCMESISA-N