sr24-curation

WikiPathways WP4018

• WikiPathways: WP4018 (classic)
• Species: Homo sapiens
• Scholia: WP4018

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 8
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 2

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 8

http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/ComplexBinding/c476b
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/ComplexBinding/efdba
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/WP/Interaction/ida67f7091
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/ComplexBinding/c3f28
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/ComplexBinding/b7dfd
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/WP/Interaction/idf75c1c60
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/WP/Interaction/id9cc40d42
http://classic.wikipathways.org/instance/WP4018_r135127 -> http://rdf.wikipathways.org/Pathway/WP4018_r135127/WP/Interaction/ide308fea3

Possible MIM translocation

Interactions between identical nodes: 1

http://classic.wikipathways.org/instance/WP4018_r135127 http://rdf.wikipathways.org/Pathway/WP4018_r135127/WP/Interaction/idf75c1c60 "HIF1B" (https://identifiers.org/ensembl/ENSG00000143437) and 
HIF1B" (https://identifiers.org/ensembl/ENSG00000143437)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations