sr24-curation

WikiPathways WP1982

• WikiPathways: WP1982 (classic)
• Species: Homo sapiens
• Scholia: WP1982

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 33
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests
  • allMetabolitesInteract: .x we found 1 problem(s):
    • Found metabolites without interaction: 4
  • metabolicConversions: .. all OK!
  • catalystsWithCommonDataSource: .. all OK!
  • metabolicConversionIdentifiersCommon: .. all OK!
  • diseasesHaveIdentifiers: .. all OK!
  • omimIdentifiers: .. all OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 11
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 9
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 4

Fails

CovidDiseaseMapsTests.interactionsWithoutReferences

Interactions without literature references: 33

http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/a64eb
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id7051bf9d
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/idbde43b8e
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id8d590471
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/iddd5f4a25
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id59369fb2
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/e33e9
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/eaace
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id8a5cf7ed
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/ComplexBinding/c3fb9
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id16e66094
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/ComplexBinding/bff8c
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/ComplexBinding/c0256
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id341eda1a
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id3becc809
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id8a98950f
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id6acaa208
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/b84e5
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/idb99df251
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id432c05c1
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/idb64035fa
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id6e8c35e8
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id7a0d8e51
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id76cbdd98
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/ComplexBinding/b0c39
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id478f28df
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/idfcf18012
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id6b4471ff
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id90720e31
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id92c94eaf
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/ida7f8963c
http://classic.wikipathways.org/instance/WP1982_r135870 -> http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id38324c84

IEMPathwayTests.allMetabolitesInteract

Found metabolites without interaction: 4

https://identifiers.org/wikipathways/WP1982 has an metabolite not linked to an interaction: UFAs
https://identifiers.org/wikipathways/WP1982 has an metabolite not linked to an interaction: PUFAs
https://identifiers.org/wikipathways/WP1982 has an metabolite not linked to an interaction: Glucose
https://identifiers.org/wikipathways/WP1982 has an metabolite not linked to an interaction: Cholesterol

InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 11

http://classic.wikipathways.org/instance/WP1982_r135870 "Cofactor" with graphId d705d
http://classic.wikipathways.org/instance/WP1982_r135870 "Cholesterol 
efflux" with graphId f3aa7
http://classic.wikipathways.org/instance/WP1982_r135870 "SRE" with graphId dbd64
http://classic.wikipathways.org/instance/WP1982_r135870 "Cholesterol 
uptake" with graphId b6757
http://classic.wikipathways.org/instance/WP1982_r135870 "Cofactor" with graphId cfeef
http://classic.wikipathways.org/instance/WP1982_r135870 "Gene" with graphId d9356
http://classic.wikipathways.org/instance/WP1982_r135870 "SRE" with graphId bc181
http://classic.wikipathways.org/instance/WP1982_r135870 "Gene" with graphId ee1fa
http://classic.wikipathways.org/instance/WP1982_r135870 "Fatty acid 
synthesis" with graphId d7664
http://classic.wikipathways.org/instance/WP1982_r135870 "Cholesterol 
synthesis" with graphId b0f09
http://classic.wikipathways.org/instance/WP1982_r135870 "Fatty acid
degradation" with graphId ec5e9

Possible MIM translocation

Interactions between identical nodes: 9

http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "nSREBP" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "nSREBP" (https://identifiers.org/ensembl/ENSG00000072310) and 
SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "nSREBP" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
SREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)
http://classic.wikipathways.org/instance/WP1982_r135870 http://rdf.wikipathways.org/Pathway/WP1982_r135870/WP/Interaction/id1a728c5d "nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310) and 
nSREBP1a,-c" (https://identifiers.org/ensembl/ENSG00000072310)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations