sr24-curation

WikiPathways WP111

• WikiPathways: WP111 (classic)
• Species: Homo sapiens
• Scholia: WP111

  Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 22
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 5 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 15 tests OK!
• HMDBMetabolitesTests: all 2 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• IEMPathwayTests: all 6 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests
  • metaboliteAlsoOtherType: .. all OK!
  • casNumbersNotMarkedAsMetabolite: .. all OK!
  • chemspiderIDsNotMarkedAsMetabolite: .. all OK!
  • HMDBIDsNotMarkedAsMetabolite: .. all OK!
  • KEGGIDsNotMarkedAsMetabolite: .. all OK!
  • metabolitesWithAnEnsembleID: .. all OK!
  • metabolitesWithAnEntrezGeneID: .. all OK!
  • metabolitesWithDbButNoIdentifier: .. all OK!
  • metabolitesWithIdentifierButNoDb: .. all OK!
  • ChEBIIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
  • PubChemIDsNotNumbers: .. all OK!
  • PubChemSubstanceIDsNotNumbers: .. all OK!
  • tooManyInChIKeys: .x we found 1 problem(s):
    • Non-zero count of metabolites with more than one InChIKey: 1
• OudatedDataSourcesTests: all 24 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 15 tests OK!

Summary

• Number of test classes: 23
• Number of tests: 140
• Number of assertions: 281
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 22

• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/b17ae
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/ComplexBinding/db040
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/ComplexBinding/affbe
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/ComplexBinding/e3a22
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/b0e4a
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/c243a
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/f52f4
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/b92fd
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/b3d7d
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/d057a
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/id86f308da
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/eb56f
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/fee15
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/f713d
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/c4d38
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/ComplexBinding/ceede
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/fa8bc
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/iddb4b9fa
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/b2b00
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/f0372
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/WP/Interaction/cdee2
• http://classic.wikipathways.org/instance/WP111_r136175 -> http://rdf.wikipathways.org/Pathway/WP111_r136175/ComplexBinding/e62a1

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Too many InChIKeys for the used identifier

Non-zero count of metabolites with more than one InChIKey: 1

• http://classic.wikipathways.org/instance/WP111_r136175 has: NAD+ (C00003) with InChIKeys: BAWFJGJZGIEFAR-NNYOXOHSSA-N, BAWFJGJZGIEFAR-NNYOXOHSSA-O

More details at https://www.wikipathways.org/WikiPathwaysCurator/MetabolitesTests/tooManyInChIKeys