SARS-CoV-2-WikiPathways

WikiPathways WP5256

• WikiPathways: WP5256 (classic)
• Species: Homo sapiens
• Scholia: WP5256
• WPRDF file: wp/Human/WP5256.ttl
• GPMLRDF file: wp/gpml/Human/WP5256.ttl
• SBML file: sbml/WP5256.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 2
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 3
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 2

• http://classic.wikipathways.org/instance/WP5256_r124640 -> http://rdf.wikipathways.org/Pathway/WP5256_r124640/WP/Interaction/idfdb6485f
• http://classic.wikipathways.org/instance/WP5256_r124640 -> http://rdf.wikipathways.org/Pathway/WP5256_r124640/WP/Interaction/id72dcf03a

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Interactions with Labels

Interactions found that involve Labels: 3

• http://classic.wikipathways.org/instance/WP5256_r124640 “mitochondrial dysfunction” with graphId bef69
• http://classic.wikipathways.org/instance/WP5256_r124640 “cytokines” with graphId d35b0
• http://classic.wikipathways.org/instance/WP5256_r124640 “Endothelial cell senescence” with graphId dc277

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

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