SARS-CoV-2-WikiPathways
WikiPathways WP5076
- WikiPathways: WP5076 (classic)
- Species: Homo sapiens
- Scholia: WP5076
- WPRDF file: wp/Human/WP5076.ttl
- GPMLRDF file: wp/gpml/Human/WP5076.ttl
- SBML file: sbml/WP5076.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
- missingHGNC: .. all OK!
- DataNodesTests: all 5 tests OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .. all OK!
- possibleTranslocations: .x we found 1 problem(s):
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 15 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 13 tests OK!
Summary
- Number of test classes: 22
- Number of tests: 111
- Number of assertions: 224
- Number of fails: 2
Fails
Interactions without references
Interactions without literature references: 8
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id5e025fa9
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id7040e5c9
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/idf2233645
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/idbda85ec8
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id5f19df3b
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/idadc90074
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/idea3369fd
- http://classic.wikipathways.org/instance/WP5076_r124654 -> http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/idc8983763
More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences
Possible MIM translocation
Interactions between identical nodes: 4
- http://classic.wikipathways.org/instance/WP5076_r124654 http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id7040e5c9 “ACE2” (https://identifiers.org/ensembl/ENSG00000130234) and ACE2” (https://identifiers.org/ensembl/ENSG00000130234)
- http://classic.wikipathways.org/instance/WP5076_r124654 http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id7040e5c9 “ACE2” (https://identifiers.org/ensembl/ENSG00000130234) and sACE2” (https://identifiers.org/ensembl/ENSG00000130234)
- http://classic.wikipathways.org/instance/WP5076_r124654 http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id7040e5c9 “sACE2” (https://identifiers.org/ensembl/ENSG00000130234) and ACE2” (https://identifiers.org/ensembl/ENSG00000130234)
- http://classic.wikipathways.org/instance/WP5076_r124654 http://rdf.wikipathways.org/Pathway/WP5076_r124654/WP/Interaction/id7040e5c9 “sACE2” (https://identifiers.org/ensembl/ENSG00000130234) and sACE2” (https://identifiers.org/ensembl/ENSG00000130234)
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations