SARS-CoV-2-WikiPathways

WikiPathways WP5039

• WikiPathways: WP5039 (classic)
• Species: Homo sapiens
• Scholia: WP5039
• WPRDF file: wp/Human/WP5039.ttl
• GPMLRDF file: wp/gpml/Human/WP5039.ttl
• SBML file: sbml/WP5039.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 23
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .. all OK!
  • possibleTranslocations: .x we found 1 problem(s):
    • Interactions between identical nodes: 1
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 23

• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/a0f18
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/df020
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/f5bcb
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/e782a
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/fdaed
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/ComplexBinding/ea43c
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/fd934
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/a69de
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/de802
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/ComplexBinding/c69be
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/idde2be3e1
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/ComplexBinding/ef9ac
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/b47a6
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/f012f
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/ComplexBinding/bf912
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/ccae3
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/e849d
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/c8785
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/ComplexBinding/e5c6f
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/b2f3d
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/ComplexBinding/cfa40
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/b5f9c
• http://classic.wikipathways.org/instance/WP5039_r134359 -> http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/bc934

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Possible MIM translocation

Interactions between identical nodes: 1

• http://classic.wikipathways.org/instance/WP5039_r134359 http://rdf.wikipathways.org/Pathway/WP5039_r134359/WP/Interaction/c94fa “SMAD3” (https://identifiers.org/ensembl/ENSG00000166949) and SMAD3” (https://identifiers.org/ensembl/ENSG00000166949)

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations

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