SARS-CoV-2-WikiPathways
WikiPathways WP4912
- WikiPathways: WP4912 (classic)
- Species: Homo sapiens
- Scholia: WP4912
- WPRDF file: wp/Human/WP4912.ttl
- GPMLRDF file: wp/gpml/Human/WP4912.ttl
- SBML file: sbml/WP4912.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
- missingHGNC: .. all OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 8 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 15 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 13 tests OK!
Summary
- Number of test classes: 22
- Number of tests: 111
- Number of assertions: 224
- Number of fails: 2
Fails
Interactions without references
Interactions without literature references: 9
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/WP/Interaction/id95166c5e
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/ea539
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/cd056
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/b9f09
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/WP/Interaction/id134a11f0
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/f278d
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/a5c10
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/ed2d7
- http://classic.wikipathways.org/instance/WP4912_r134670 -> http://rdf.wikipathways.org/Pathway/WP4912_r134670/ComplexBinding/d1b60
More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences
Data nodes without an identifier
The following DataNodes have no identifier: 3
- http://classic.wikipathways.org/instance/WP4912_r134670 http://rdf.wikipathways.org/Pathway/WP4912_r134670/DataNode/cde94 (Endocytosis)
- http://classic.wikipathways.org/instance/WP4912_r134670 http://rdf.wikipathways.org/Pathway/WP4912_r134670/DataNode/c7d27 (IFN-beta response element)
- http://classic.wikipathways.org/instance/WP4912_r134670 http://rdf.wikipathways.org/Pathway/WP4912_r134670/DataNode/a74fc (ISRE response element)
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier