SARS-CoV-2-WikiPathways

WikiPathways WP4883

• WikiPathways: WP4883 (classic)
• Species: Homo sapiens
• Scholia: WP4883
• WPRDF file: wp/Human/WP4883.ttl
• GPMLRDF file: wp/gpml/Human/WP4883.ttl
• SBML file: sbml/WP4883.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 2
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests
  • noMetaboliteToNonMetaboliteConversions: .. all OK!
  • noNonMetaboliteToMetaboliteConversions: .. all OK!
  • noGeneProteinConversions: .. all OK!
  • nonNumericIDs: .. all OK!
  • interactionsWithLabels: .x we found 1 problem(s):
    • Interactions found that involve Labels: 4
  • possibleTranslocations: .. all OK!
  • noProteinProteinConversions: .. all OK!
  • incorrectKEGGIdentifiers: .. all OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 2

• http://classic.wikipathways.org/instance/WP4883_r120620 -> http://rdf.wikipathways.org/Pathway/WP4883_r120620/WP/Interaction/id4093d262
• http://classic.wikipathways.org/instance/WP4883_r120620 -> http://rdf.wikipathways.org/Pathway/WP4883_r120620/WP/Interaction/id3739bd1

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Interactions with Labels

Interactions found that involve Labels: 4

• http://classic.wikipathways.org/instance/WP4883_r120620 “Tissue injury” with graphId cfb7f
• http://classic.wikipathways.org/instance/WP4883_r120620 “Accumulation of angiotensin” with graphId db780
• http://classic.wikipathways.org/instance/WP4883_r120620 “Spike vaccine” with graphId bc845
• http://classic.wikipathways.org/instance/WP4883_r120620 “Tissue production” with graphId d3c68

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels

This site is open source. Improve this page.