SARS-CoV-2-WikiPathways
WikiPathways WP4868
- WikiPathways: WP4868 (classic)
- Species: Homo sapiens
- Scholia: WP4868
- WPRDF file: wp/Human/WP4868.ttl
- GPMLRDF file: wp/gpml/Human/WP4868.ttl
- SBML file: sbml/WP4868.sbml (SVG) (conversion notes)
Tests
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 5 tests OK!
- ChemSpiderTests: all 2 tests OK!
- CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
- missingHGNC: .. all OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- otherDataSource: .. all OK!
- EnsemblTests: all 4 tests OK!
- GeneTests: all 4 tests OK!
- GeneralTests: all 13 tests OK!
- HMDBMetabolitesTests: all 1 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests
- noMetaboliteToNonMetaboliteConversions: .. all OK!
- noNonMetaboliteToMetaboliteConversions: .. all OK!
- noGeneProteinConversions: .. all OK!
- nonNumericIDs: .. all OK!
- interactionsWithLabels: .x we found 1 problem(s):
- possibleTranslocations: .. all OK!
- noProteinProteinConversions: .. all OK!
- incorrectKEGGIdentifiers: .. all OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetaboliteStructureTests: all 1 tests OK!
- MetabolitesTests: all 15 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests: all 7 tests OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 6 tests OK!
- UniProtTests: all 5 tests OK!
- WikidataTests: all 13 tests OK!
Summary
- Number of test classes: 22
- Number of tests: 111
- Number of assertions: 224
- Number of fails: 3
Fails
Interactions without references
Interactions without literature references: 8
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/ComplexBinding/b11a3
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/WP/Interaction/id97a8368b
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/ComplexBinding/bc0e3
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/WP/Interaction/idf6e0bc7f
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/WP/Interaction/ba761
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/WP/Interaction/dca81
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/ComplexBinding/b8407
- http://classic.wikipathways.org/instance/WP4868_r135713 -> http://rdf.wikipathways.org/Pathway/WP4868_r135713/ComplexBinding/d769c
More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences
Data nodes without an identifier
The following DataNodes have no identifier: 4
- http://classic.wikipathways.org/instance/WP4868_r135713 http://rdf.wikipathways.org/Pathway/WP4868_r135713/DataNode/f1bfb (ISGs)
- http://classic.wikipathways.org/instance/WP4868_r135713 http://rdf.wikipathways.org/Pathway/WP4868_r135713/DataNode/c1ec8 (Innate Immunity)
- http://classic.wikipathways.org/instance/WP4868_r135713 http://rdf.wikipathways.org/Pathway/WP4868_r135713/DataNode/d99d5 (Pro-inflammatory cytokines production)
- http://classic.wikipathways.org/instance/WP4868_r135713 http://rdf.wikipathways.org/Pathway/WP4868_r135713/DataNode/a8003 (TRIF )
More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier
Interactions with Labels
Interactions found that involve Labels: 1
- http://classic.wikipathways.org/instance/WP4868_r135713 “NFkB” with graphId e788c
More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/interactionsWithLabels