SARS-CoV-2-WikiPathways

WikiPathways WP4861

• WikiPathways: WP4861 (classic)
• Species: Homo sapiens
• Scholia: WP4861
• WPRDF file: wp/Human/WP4861.ttl
• GPMLRDF file: wp/gpml/Human/WP4861.ttl
• SBML file: sbml/WP4861.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 21
  • missingHGNC: .. all OK!
• DataNodesTests
  • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • The following DataNodes have no identifier: 11
  • unknownTypes_knownDatasource: .. all OK!
  • unknownTypes: .. all OK!
  • unknownTypes_Reactome: .. all OK!
  • otherDataSource: .. all OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests: all 13 tests OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 21

• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/ComplexBinding/df8e0
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id334c961f
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/ComplexBinding/f8553
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/fc5c1
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/ComplexBinding/d477c
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/idda829af2
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/ida575a860
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/idad3f9625
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/iddbc481e4
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id74bb08d8
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id7f19c7ea
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/iddcd631b5
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/idc828ca15
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id315b7e46
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id3b399cfb
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id7f4a3b95
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/ided8176a0
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id36593f74
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id5555a7cf
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/idb174dd6a
• http://classic.wikipathways.org/instance/WP4861_r135076 -> http://rdf.wikipathways.org/Pathway/WP4861_r135076/WP/Interaction/id8122cdf4

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

Data nodes without an identifier

The following DataNodes have no identifier: 11

• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/c90ec (Amino acid synthesis Antioxidant response Apoptosis)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/e0713 (C/EBP CCAAT enhancer binding protein)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/d0da6 (CRE cAMP response element)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/c085b (ER protein chaperones Lipid biosynthesis ER-associated degradation)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/e9fd9 (ER-associated mRNA)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/ed36d (Global protein translation)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/d43bc (MERS 4a)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/c094e (RIDD)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/a4bee (SARS 8ab)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/dc80b (SARS, IBV infection)
• http://classic.wikipathways.org/instance/WP4861_r135076 http://rdf.wikipathways.org/Pathway/WP4861_r135076/DataNode/cd9a0 (SARS, OC43, MHV, IBV infection)

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

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