Nuclear receptors in lipid metabolism and toxicity (Homo sapiens)

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Description

Nuclear receptors are transcription factors that are activated upon binding to its ligands. Initially, they had been classified as classic endocrine nuclear hormone receptors and orphan receptors. However, further studies have led to the identification of lipid ligands for some of these ‘adopted’ orphan receptors, which are responsible for lipid metabolism, storage or elimination. One of the characteristics of these receptors is that they act by forming heterodimers with retinoid X receptor (RXR). The receptors include peroxisome proliferators-Activated receptors (PPARs) for fatty acids, liver X receptor (LCR) for oxysterols, Farnesoid X receptors (FXR) for bile acids and steroid xenobiotic receptor/X receptor (SXR/PXR or Nsil2) for xenobiotics. Other orphan receptors also require RXR for its functions are vitamin D receptor (VDR) for vitamin D and retinoic acid receptor (RAR) for retinoid acids, although these receptors are not involved in lipid metabolism. Upon binding to various ligands, three classes of proteins are synthesized including lipid binding proteins, the ATP-binding cassette (ABC) transporters and cytochrome P450 member proteins which catalyzes lipid anabolism, metabolism and elimination.

In addition to lipid metabolism, some members of the cytochrome P450 family genes are responsible for activation of procarcinogens, detoxification of environmental toxins and metabolism of drugs and xenobiotics. In particular, CAR, Nsil2 and recently identified VDR are important in up-regulation of these cytochromes. Of all the human cytochrome P450 genes, only a few CYP1A2, CYP2C9, CYP2C19, CYP2D6, CYP2E1 and CYP3A4 account for most toxicity effects, specifically CYP3A is responsible for clearing approximately half of the clinically prescribed drugs. For instance, acetaminophen, one of the most commonly used drug, is toxic in high doses due to the activation of CAR and the drug’s subsequentconversion to acetyl-p-benzoquinone imine (NAPQI) by CYP1A2, CYP2E1 and CYP3A.


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CompareRevisionActionTimeUserComment
35672view22:46, 12 February 2010KhanspersDescription
35670view22:45, 12 February 2010KhanspersModified description
34436view18:16, 10 December 2009MaintBotAutomatic update of empty xrefs
32035view13:27, 14 August 2009MaintBotFixed group labels
21309view11:31, 14 November 2008MaintBot[[Pathway:Homo sapiens:Nuclear receptors in lipid metabolism and toxicity]] moved to [[Pathway:WP299]]: Moved to stable identifier
14008view17:20, 20 May 2008Thomasconnected lines
14006view17:13, 20 May 2008Thomasadded some metabolite annotations
13095view11:15, 17 May 2008MaintBotautomated metabolite conversion
8290view13:46, 7 January 2008MaintBot[[Pathway:Human:Nuclear receptors in lipid metabolism and toxicity]] moved to [[Pathway:Homo sapiens:Nuclear receptors in lipid metabolism and toxicity]]: Renaming species
7765view16:16, 18 December 2007MaintBotfixed category names
7381view12:42, 4 November 2007MaintBotAdded categories to GPML
6356view22:18, 22 May 2007S.Burelgpml file for [[Human:Nuclear_receptors_in_lipid_metabolism_and_toxicity]]

Pathway Info

DataNodes

View all 46 DataNodes

Name Type Backpage Header Database reference
CYP2C9GeneProductCYP2C9 | cytochrome P450 family 2 subfamily C...1559 (Entrez Gene)
CYP7A1GeneProductCYP7A1 | cytochrome P450 family 7 subfamily A...1581 (Entrez Gene)
CYP4A11GeneProductCYP4A11 | cytochrome P450 family 4 subfamily ...1579 (Entrez Gene)
OxysterolMetabolite
PPARGGeneProductPPARG | peroxisome proliferative activated rece...5468 (Entrez Gene)
VDRGeneProductVDR | vitamin D (125- dihydroxyvitamin D3) rec...7421 (Entrez Gene)
PPARAGeneProductPPARA | peroxisome proliferative activated rece...5465 (Entrez Gene)
CYP27B1GeneProductCYP27B1 | cytochrome P450 family 27 subfamily...1594 (Entrez Gene)
PPARDGeneProductPPARD | peroxisome proliferative activated rece...5467 (Entrez Gene)
1,25-Dihydroxy-Vitamins D3Metabolite
ABCD3GeneProductABCD3 | ATP-binding cassette sub-family D (ALD...5825 (Entrez Gene)
RARGGeneProductRARG | retinoic acid receptor gamma5916 (Entrez Gene)
ABCD2GeneProductABCD2 | ATP-binding cassette sub-family D (ALD...225 (Entrez Gene)
RARBGeneProductRARB | retinoic acid receptor beta5915 (Entrez Gene)
ABCA1GeneProductABCA1 | ATP-binding cassette sub-family A (ABC...19 (Entrez Gene)
CYP1A2GeneProductCYP1A2 | cytochrome P450 family 1 subfamily A...1544 (Entrez Gene)
ABCB4GeneProductABCB4 | ATP-binding cassette sub-family B (MDR...5244 (Entrez Gene)
7-DehydroCholesterolMetabolite434-16-2 (CAS)
ABCB11GeneProductABCB11 | ATP-binding cassette sub-family B (MD...8647 (Entrez Gene)
IsoprenoidsMetabolite24913 (ChEBI)
ABCB1aGeneProductABCB1a (Entrez Gene)
Bile AcidsMetabolite3098 (ChEBI)
ABCB1GeneProductABCB1 | ATP-binding cassette sub-family B (MDR...5243 (Entrez Gene)
RARAGeneProductRARA | retinoic acid receptor alpha5914 (Entrez Gene)
ABCC2GeneProductABCC2 | ATP-binding cassette sub-family C (CFT...1244 (Entrez Gene)
CYP3A4GeneProductCYP3A4 | cytochrome P450 family 3 subfamily A...1576 (Entrez Gene)
ABCC3GeneProductABCC3 | ATP-binding cassette sub-family C (CFT...8714 (Entrez Gene)
CYP26A1GeneProductCYP26A1 | cytochrome P450 family 26 subfamily...1592 (Entrez Gene)
ABCG1GeneProductABCG1 | ATP-binding cassette sub-family G (WHI...9619 (Entrez Gene)
CYP2E1GeneProductCYP2E1 | cytochrome P450 family 2 subfamily E...1571 (Entrez Gene)
ABCG5GeneProductABCG5 | ATP-binding cassette sub-family G (WHI...64240 (Entrez Gene)
CYP2B6GeneProductCYP2B6 | cytochrome P450 family 2 subfamily B...1555 (Entrez Gene)
abcg6GeneProductabcg6
CYP24A1GeneProductCYP24A1 | cytochrome P450 family 24 subfamily...1591 (Entrez Gene)
NR1H4GeneProductNR1H4 | nuclear receptor subfamily 1 group H ...9971 (Entrez Gene)
Acetyl CoAMetabolite72-89-9 (CAS)
NR1H3GeneProductNR1H3 | nuclear receptor subfamily 1 group H ...10062 (Entrez Gene)
CholesterolMetabolite57-88-5 (CAS)
CYP8B1GeneProductCYP8B1 | cytochrome P450 family 8 subfamily B...1582 (Entrez Gene)
LanosterolMetabolite6374 (ChEBI)
NR1I2GeneProductNR1I2 | nuclear receptor subfamily 1 group I ...8856 (Entrez Gene)
Fatty AcidsMetabolite35366 (ChEBI)
NR1I3GeneProductNR1I3 | nuclear receptor subfamily 1 group I ...9970 (Entrez Gene)
Retinoic acidMetaboliteHMDB01852 (HMDB)
CYP4B1GeneProductCYP4B1 | cytochrome P450 family 4 subfamily B...1580 (Entrez Gene)
SteroidsMetabolite
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