Asparagine N-linked glycosylation (Homo sapiens)

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Description

N-linked glycosylation is the most important form of post-translational modification for proteins synthesized and folded in the Endoplasmic Reticulum (Stanley P et al, 2009). An early study in 1999 revealed that about 50% of the proteins in the Swiss-Prot database at the time were N-glycosylated (Apweiler R et al, 1999). It is now established that the majority of the proteins in the secretory pathway require glycosylation in order to achieve proper folding.
The addition of an N-glycan to a protein can have several roles (Shental-Bechor D and Levy Y, 2009). First, glycans enhance the solubility and stability of the proteins in the ER, the golgi and on the outside of the cell membrane, where the composition of the medium is strongly hydrophilic and where proteins, that are mostly hydrophobic, have difficulty folding properly. Second, N-glycans are used as signal molecules during the folding and transport process of the protein: they have the role of labels to determine when a protein must interact with a chaperon, be transported to the golgi, or targeted for degradation in case of major folding defects. Third, and most importantly, N-glycans on completely folded proteins are involved in a wide range of processes: they help determine the specificity of membrane receptors in innate immunity or in cell-to-cell interactions, they can change the properties of hormones and secreted proteins, or of the proteins in the vesicular system inside the cell.
All N-linked glycans are derived from a common 14-sugar oligosaccharide synthesized in the ER, which is attached co-translationally to a protein while this is being translated inside the reticulum. The process of the synthesis of this glycan, known as Synthesis of the N-glycan precursor or LLO, constitutes one of the most conserved pathways in eukaryotes, and has been also observed in some eubacteria. The attachment usually happens on an asparagine residue within the consensus sequence asparagine-X-threonine by an complex called oligosaccharyl transferase (OST).
After being attached to an unfolded protein, the glycan is used as a label molecule in the folding process (also known as Calnexin/Calreticulin cycle) (Lederkremer GZ, 2009). The majority of the glycoproteins in the ER require at least one glycosylated residue in order to achieve proper folding, even if it has been shown that a smaller portion of the proteins in the ER can be folded without this modification.
Once the glycoprotein has achieved proper folding, it is transported via the Cis-golgi through all the Golgi compartments, where the glycan is further modified according to the properties of the glycoprotein. This process involves relatively few enzymes but due to its combinatorial nature, can lead to several millions of different possible modifications. The exact topography of this network of reactions has not been established yet, representing one of the major challenges after the sequencing of the human genome (Hossler P et al, 2006).
Since N-glycosylation is involved in an great number of different processes, from cell-cell interaction to folding control, mutations in one of the genes involved in glycan assembly and/or modification can lead to severe development problems (often affecting the central nervous system). All the diseases in genes involved in glycosylation are collectively known as Congenital Disorders of Glycosylation (CDG) (Sparks SE et al, 2003), and classified as CDG type I for the genes in the LLO synthesis pathway, and CDG type II for the others.

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History

CompareRevisionActionTimeUserComment
44964view12:49, 6 October 2011MartijnVanIerselOntology Term : 'protein modification pathway' added !
42008view21:49, 4 March 2011MaintBotAutomatic update
39811view05:50, 21 January 2011MaintBotNew pathway

External references

View all 144...

Name Type Database reference
B4GALT1-6

homodimers

UnknownREACT_26591 (Reactome)
unfolded protein:

(GlcNAc)2 (Man)8a

ComplexREACT_25760 (Reactome)
OST complex ComplexREACT_23228 (Reactome)
unfolded protein:

glycan (no glucose)

ComplexREACT_24309 (Reactome)
Dolichyl phosphate Metabolite16214 (ChEBI)
N-glycoprotein Metabolite59520 (ChEBI)
unfolded protein UnknownREACT_18756 (Reactome)
Sec24 ProteinREACT_12982 (Reactome)
GDP Metabolite17552 (ChEBI)
(un)folded protein:

(GlcNAc)2 (Man)9

ComplexREACT_24185 (Reactome)
uridine 5'-

diphosphate

Metabolite17659 (ChEBI)
(GlcNAc)2 (Man)9 Metabolite59092 (ChEBI)
(GlcNAc)2 (Man)5

(PP-Dol)1

Metabolite53022 (ChEBI)
Glycoprotein with

fucosyl alpha-1,6- GlcNAc

UnknownREACT_26726 (Reactome)
ALG6 ProteinQ9Y672 (UniProt)
Sec12 ProteinQ9HCU5 (UniProt)
(Glc)1 (GlcNAc)2

(Man)9 (PP-Dol)1

Metabolite59081 (ChEBI)
unfolded protein:

(Glc)2 (GlcNAc)2 (Man)9 (Asn)1: malectin

ComplexREACT_24801 (Reactome)
N,N'-

diacetylchitobiosyldiph osphodolichol

Metabolite18341 (ChEBI)
unfolded protein:

(Glc)1 (GlcNAc)2 (Man)9

ComplexREACT_26238 (Reactome)
RFT1 ProteinQ96AA3 (UniProt)
unfolded protein:

(GlcNAc)2 (Man)8c

ComplexREACT_26221 (Reactome)
ALG13:ALG14

complex

UnknownREACT_22489 (Reactome)
LMAN1:MCFD2 ComplexREACT_26123 (Reactome)
ALG3 ProteinQ92685 (UniProt)
(GlcNAc)2 (Man)7bc Metabolite60637 (ChEBI)
ALG10 homologue UnknownREACT_22988 (Reactome)
MAN2:Zn2+ UnknownREACT_26817 (Reactome)
(GlcNAc)2 (Man)2

(PP-Dol)1

Metabolite59085 (ChEBI)
Glycoprotein with

GlcNAc in position 5

UnknownREACT_26240 (Reactome)
UMP Metabolite16695 (ChEBI)
ST8SIAs ProteinREACT_25611 (Reactome)
ALG1 ProteinQ9BT22 (UniProt)
Protein transport

protein Sec31A

ProteinO94979 (UniProt)
ALG8 ProteinQ9BVK2 (UniProt)
UAP1 homodimer ComplexREACT_22471 (Reactome)
beta-D-

mannosyldiacetylchitobi osyldiphosphodolichol

Metabolite18396 (ChEBI)
unfolded protein:

glycan:chaperone: ERp57

ComplexREACT_24597 (Reactome)
UDP-N-acetyl-D-

glucosamine

Metabolite16264 (ChEBI)
unfolded protein:

(Glc)1 (GlcNAc)2 (Man)9 (Asn)1: chaperone

ComplexREACT_24814 (Reactome)
DPAGT1 ProteinQ9H3H5 (UniProt)
calnexin/calreticulin ComplexREACT_24766 (Reactome)
(GlcNAc)2 (Man)9

(PP-Dol)1

Metabolite59093 (ChEBI)
D-mannose Metabolite4208 (ChEBI)
ALG9 ProteinQ9H6U8 (UniProt)
unfolded protein:

(GlcNAc)2 (Man)7aa

ComplexREACT_26126 (Reactome)
ALG11 ProteinQ2TAA5 (UniProt)
Glycoproteins with

Man8 N-glycans

ComplexREACT_26233 (Reactome)
(GlcNAc)2 (Man)7

(PP-Dol)1

Metabolite59088 (ChEBI)
(GlcNAc)2 (Man)8

(Asn)1

Metabolite59089 (ChEBI)
(GlcNAc)2 (Man)3

(PP-Dol)1

Metabolite53742 (ChEBI)
MAN1A1/A2/C1 UnknownREACT_25706 (Reactome)
ALG2 ProteinQ9H553 (UniProt)
UDP Metabolite17659 (ChEBI)
(Glc)3 (GlcNAc)2

(Man)9 (PP-Dol)1

Metabolite53019 (ChEBI)
MGAT3 ProteinQ09327 (UniProt)
(GlcNAc)2 (Man)8

(PP-Dol)1

Metabolite59091 (ChEBI)
MGAT2 ProteinQ10469 (UniProt)
N-acetyl-D-

glucosaminyl- diphosphodolichol

Metabolite18278 (ChEBI)
Glycoprotein with

GlcNAc in position 4

UnknownREACT_26694 (Reactome)
(GlcNAc)2 (Man)6

(PP-Dol)1

Metabolite53023 (ChEBI)
UDP-D-galactose Metabolite18307 (ChEBI)
ALG12 ProteinQ9BV10 (UniProt)
Glycoprotein with

sialic acid

UnknownREACT_26541 (Reactome)
(Glc)2 (GlcNAc)2

(Man)9 (PP-Dol)1

Metabolite53020 (ChEBI)
Sar1p:GDP Complex ComplexREACT_12715 (Reactome)
GDP-alpha-D-

mannose

Metabolite15820 (ChEBI)
Sar1p:GTP:Sec23p:

Sec24p

ComplexREACT_13151 (Reactome)
Dolichyl phosphate D-

mannose

Metabolite15809 (ChEBI)
Sar1p:Sec23p:

Sec24p:Sec13p: Sec31p Complex

ComplexREACT_12742 (Reactome)
CTP Metabolite17677 (ChEBI)
unfolded protein:

(Glc)3 (GlcNAc)2 (Man)9 (Asn)1

ComplexREACT_22818 (Reactome)
DOLPP1 ProteinQ86YN1 (UniProt)
GNPNAT1

homodimer

ComplexREACT_22659 (Reactome)
Dolichol Metabolite16091 (ChEBI)
Malectin ProteinQ14165 (UniProt)
Dolichol kinase ProteinQ9UPQ8 (UniProt)
ERp57 ProteinP30101 (UniProt)
cytidine 5'-

diphosphate

Metabolite17239 (ChEBI)
calreticulin/calnexin ProteinREACT_24126 (Reactome)
Orthophosphate Metabolite18367 (ChEBI)
(un)folded protein:

(GlcNAc)2 (Man)9

ComplexREACT_24760 (Reactome)
H2O Metabolite15377 (ChEBI)
unfolded protein:

(Glc)1 (GlcNAc)2 (Man)9 (Asn)1: chaperone:ERp57

ComplexREACT_24059 (Reactome)
Dolichyl

diphosphate

Metabolite15750 (ChEBI)
(un)folded protein:

(GlcNAc)2 (Man)9

ComplexREACT_24075 (Reactome)
CoA-SH Metabolite15346 (ChEBI)
unfolded protein:

(GlcNAc)2 (Man)8b

ComplexREACT_25730 (Reactome)
PGM3 ProteinO95394 (UniProt)
MAN1B1 ProteinQ9UKM7 (UniProt)
Acetyl-CoA Metabolite15351 (ChEBI)
unfolded protein:

(GlcNAc)2 (Man)8a

ComplexREACT_26747 (Reactome)
pyrophosphate Metabolite29888 (ChEBI)
unfolded protein:

(GlcNAc)2 (Man)7aa

ComplexREACT_27046 (Reactome)
L-Glutamate Metabolite16015 (ChEBI)
EDEM ProteinREACT_27025 (Reactome)
N-Acetyl-D-

glucosamine 1- phosphate

Metabolite7125 (ChEBI)
Glycoproteins with

Man8 N-glycans

ComplexREACT_25793 (Reactome)
GFPT1/2 UnknownREACT_22587 (Reactome)
(Glc)3 (GlcNAc)2

(Man)9 (Asn)1

Metabolite59084 (ChEBI)
UTP Metabolite15713 (ChEBI)
MANEA ProteinQ5SRI9 (UniProt)
D-glucosamine 6-

phosphate

Metabolite15873 (ChEBI)
(GlcNAc)2 (Man)5

(Asn)1

Metabolite59087 (ChEBI)
L-Glutamine Metabolite18050 (ChEBI)
(GlcNAc)2 (Man)8

glycans

MetaboliteREACT_26078 (Reactome)
N-Acetyl-D-

glucosamine 6- phosphate

Metabolite15784 (ChEBI)
(GlcNAc)3 (Man)5

(Asn)1

Metabolite60625 (ChEBI)
MPI ProteinP34949 (UniProt)
MGAT1 ProteinP26572 (UniProt)
D-Mannose 1-

phosphate

Metabolite35374 (ChEBI)
Glycoprotein with

bifurcating GlcNAc in position 3

UnknownREACT_25989 (Reactome)
D-Fructose 6-

phosphate

Metabolite15946 (ChEBI)
(GlcNAc)3 (Man)3

(Asn)1

Metabolite60615 (ChEBI)
D-Mannose 6-

phosphate

Metabolite17369 (ChEBI)
(GlcNAc)4 (Man)3

(Asn)1

Metabolite60651 (ChEBI)
GTP Metabolite15996 (ChEBI)
GDP-L-fucose Metabolite17009 (ChEBI)
PMM1/2 UnknownREACT_22680 (Reactome)
Alpha-1,6-

fucosyltransferase 8

ProteinQ9BYC5 (UniProt)
GMPPA/B UnknownREACT_22600 (Reactome)
MGAT4s UnknownREACT_26701 (Reactome)
dolichyl-phosphate

mannosyltransferase

ComplexREACT_3881 (Reactome)
MGAT5 ProteinQ09328 (UniProt)
dolichyl phosphate

D-mannose

UnknownC03862 (COMPOUND)
Glycoprotein with

galactose

UnknownREACT_26909 (Reactome)
ALG5 ProteinQ9Y673 (UniProt)
9-O-

acetylneuraminic acid

Metabolite28879 (ChEBI)
Dolichyl beta-D-

glucosyl phosphate

Metabolite15812 (ChEBI)
ST6GAL1 ProteinP15907 (UniProt)
UDP-glucose Metabolite18066 (ChEBI)
ST3GAL4 ProteinQ11206 (UniProt)
glucosidase II ComplexREACT_24609 (Reactome)
Sar1p:GTP Complex ComplexREACT_12713 (Reactome)
MOGS ProteinQ13724 (UniProt)
Sec23p:Sec24p

Complex

ComplexREACT_13290 (Reactome)
unfolded protein:

(Glc)1 (GlcNAc)2 (Man)9 (Asn)1

ComplexREACT_24493 (Reactome)
SEC13-related

protein

ProteinP55735 (UniProt)
UGGT1/2 UnknownREACT_26186 (Reactome)
Sar1p:GTP:Sec23p:

Sec24p:Sec13p: Sec31p Complex

ComplexREACT_13165 (Reactome)
alpha-D-glucose Metabolite17925 (ChEBI)
Protein transport

protein Sec23A

ProteinQ15436 (UniProt)
unfolded protein:

(Glc)2 (GlcNAc)2 (Man)9 (Asn)1

ComplexREACT_24146 (Reactome)
SAR1B GTP-binding

protein

ProteinQ9Y6B6 (UniProt)
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