Sphingolipid Metabolism (Homo sapiens)

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Curation Tags

Description

The sphingolipid metabolites and genes (with the gene abbreviations shown in boxes, or enzyme names where gene names are ambiguous) are given for the condensation of serine and palmitoyl-CoA to form 3-ketosphinganine (3-ketoSa) by serine palmitoyltransferase, which is reduced to sphinganine (Sa), acylated to dihydroceramides, DHCer, by (DH)Cer synthases, and incorporated into more complex DH-sphingolipids (the 1-phosphate, DHCerP, sphingomyelins, DHSM, glucosylceramides, DHGlcCer, galactosylceramides, DHGalCer, lactosylceramides, DHLacCer, and sulfatides, or desaturated to Cer followed by headgroup addition. Also included are a number of the catabolic genes, e.g., sphingomyelinases, SMases, ceramidases, ASAH, sphingosine kinases, for the formation of sphinganine 1-phosphate (Sa1P) and sphingosine 1-phosphate (So1P), and phosphatases for the reverse reaction and the lyase that cleaves sphingoid base 1-phosphates to ethanolamine phosphate (EP), hexadecanal (C16:0al) and hexadecenal (C16:1al).

Ontology Tags

 

Bibliography

  1. Merrill AH Jr, Stokes TH, Momin A, Park H, Portz BJ, Kelly S, Wang E, Sullards MC, Wang MD; ''Sphingolipidomics: a valuable tool for understanding the roles of sphingolipids in biology and disease.; ''J Lipid Res, 2009 - PubMed
  2. Merrill AH Jr, Wang MD, Park M, Sullards MC; ''(Glyco)sphingolipidology: an amazing challenge and opportunity for systems biology.; ''Trends Biochem Sci, 2007 - PubMed

Categories


History

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CompareRevisionActionTimeUserComment
59452view20:28, 27 February 2013Khanspersdatanode annotation
59451view20:24, 27 February 2013Khanspersfinal edits
59450view20:23, 27 February 2013Khansperswork in progress
59449view20:06, 27 February 2013Khansperswork in progress
59448view20:04, 27 February 2013Khansperswork in progress
59447view20:01, 27 February 2013Khansperswork in progress
59411view22:31, 26 February 2013MaintBotwork in progress
59410view22:27, 26 February 2013MaintBotPeriodical save, work in progress
59409view22:11, 26 February 2013MaintBotwork in progress
59408view22:09, 26 February 2013MaintBotPeriodical save, work in progress
59407view21:58, 26 February 2013MaintBotPeriodical save, work in progress
59404view21:48, 26 February 2013MaintBotPeriodical save, work in progress
59403view21:43, 26 February 2013MaintBotwork in progress
59402view21:38, 26 February 2013MaintBotPeriodical save, work in progress
59401view21:35, 26 February 2013MaintBotwork in progress
59400view21:15, 26 February 2013MaintBotModified description
59399view21:14, 26 February 2013MaintBotModified description
45123view00:07, 7 October 2011KhanspersOntology Term : 'sphingolipid metabolic pathway' added !
41072view23:19, 1 March 2011MaintBotRemoved redundant pathway information and comments
34579view22:15, 21 December 2009KhanspersModified categories
33372view14:35, 30 November 2009MaintBotRemoved group label
33093view19:12, 14 October 2009MaintBotAdded references, as examples
33066view20:48, 11 October 2009MaintBot
33065view20:45, 11 October 2009MaintBotNew pathway

External references

View all 55...

Name Type Database reference
DHGalCerMetabolite (HMDB)
ASAH1GeneProduct427 (Entrez Gene)
DHCer1PMetabolite
SPT3GeneProduct55304 (Entrez Gene)
SPT1GeneProduct10558 (Entrez Gene)
DHSTMetabolite (HMDB)
SPHK1GeneProduct8877 (Entrez Gene)
PPAP2AGeneProduct8611 (Entrez Gene)
B4GALT6GeneProduct9331 (Entrez Gene)
CerS6GeneProduct253782 (Entrez Gene)
3-ketosphinganineMetabolite
SMS2ProteinQ8NHU3 (Uniprot/TrEMBL)
SphingomyelinMetaboliteHMDB01348 (HMDB)
CerS5GeneProduct91012 (Entrez Gene)
SphingosineMetaboliteHMDB00252 (HMDB)
SMase1GeneProduct (Entrez Gene)
CerS2GeneProduct29956 (Entrez Gene)
GalCer SynthaseGeneProduct (Entrez Gene)
SaP lyase1GeneProduct (Entrez Gene)
CeramidesMetaboliteHMDB04949 (HMDB)
Palmityl-CoAMetaboliteHMDB01338 (HMDB)
SGPP2GeneProduct130367 (Entrez Gene)
C16:0-alMetabolite
SPHK2GeneProduct56848 (Entrez Gene)
Cer1PMetabolite
DES1GeneProduct (Entrez Gene)
LactosylceramideMetaboliteHMDB04868 (HMDB)
DHGlcCerMetabolite (HMDB)
SMS1ProteinQ86VZ5 (Uniprot/TrEMBL)
DihydroceramideMetaboliteHMDB06752 (HMDB)
Ethanolamine phosphateMetaboliteEP (Other)
SoP lyase1GeneProduct (Entrez Gene)
SMase2GeneProduct (Entrez Gene)
DHLacCerMetabolite (HMDB)
SPT2GeneProduct9517 (Entrez Gene)
DES2GeneProduct (Entrez Gene)
Sphingosine 1-phosphateMetaboliteHMDB00277 (HMDB)
GAL3ST1GeneProduct9514 (Entrez Gene)
CerS1GeneProduct57515 (Entrez Gene)
CERTGeneProduct (Entrez Gene)
SerineMetaboliteHMDB00187 (HMDB)
CerS3GeneProduct204219 (Entrez Gene)
SphinganineMetaboliteHMDB00269 (HMDB)
ASAH3GeneProduct (Entrez Gene)
Sa 1-phosphateMetaboliteHMDB01383 (HMDB)
ASAH2GeneProduct56624 (Entrez Gene)
C16:1-alMetabolite
DHSMMetabolite (HMDB)
CERKGeneProduct64781 (Entrez Gene)
CerS4GeneProduct79603 (Entrez Gene)
GalCerMetaboliteHMDB00140 (HMDB)
FVT1GeneProduct2531 (Entrez Gene)
GlcCerMetaboliteHMDB00140 (HMDB)
GlcCer SynthaseGeneProduct (Entrez Gene)
SulfatideMetaboliteHMDB00024 (HMDB)
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