Daily Download

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GMT Gene Sets

You can download the complete WikiPathways gene set collection here.

This file gets updated every day. We archive earlier versions of the collection here.

Plain text

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in plain text format. This format contains a list of all data nodes, with the identifier in the first column, and the database system in the second column.

GPML

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in GPML format. You can view and edit GPML files in PathVisio. You can also use GPML files for analysis in both PathVisio and Cytoscape using the WikiPathways app.

BioPAX

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in BioPAX level 3 format.

Eu.Gene

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in the Eu.Gene format (pwf). Eu.Gene is a tool for microarray analysis in context of biological pathways (read more).

Graphical formats

PDF

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in Portable Document Format (PDF).

SVG

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in SVG format. The SVG files can be used to create high quality images for publication purposes. You can edit and convert the SVG files using Inkscape.

PNG

Click on one of the links below to download the current pathways marked with the Approved version curation tag, in the Portable Network Graphics (png) format.

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